Package: APCalign 2.0.0

Elizabeth Wenk

APCalign: Resolving Plant Taxon Names Using the Australian Plant Census

The process of resolving and updating taxon names is necessary when working with biodiversity data. 'APCalign' uses the Australian Plant Census (APC) and the Australian Plant Name Index (APNI) to align and update plant taxon names to current, accepted standards. 'APCalign' also supplies information about the establishment status (i.e. native or introduced) of plant taxa across different states/territories.

Authors:Elizabeth Wenk [aut, cre, cph], Daniel Falster [aut, ctb], Will Cornwell [aut, ctb], Fonti Kar [aut, ctb], Carl Boettiger [ctb]

APCalign_2.0.0.tar.gz
APCalign_2.0.0.zip(r-4.7)APCalign_2.0.0.zip(r-4.6)APCalign_2.0.0.zip(r-4.5)
APCalign_2.0.0.tgz(r-4.6-any)APCalign_2.0.0.tgz(r-4.5-any)
APCalign_2.0.0.tar.gz(r-4.7-any)APCalign_2.0.0.tar.gz(r-4.6-any)
APCalign_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
APCalign/json (API)
NEWS

# Install 'APCalign' in R:
install.packages('APCalign', repos = c('https://traitecoevo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/traitecoevo/apcalign/issues

Pkgdown/docs site:https://traitecoevo.github.io

Datasets:

On CRAN:

Conda:

6.79 score 5 stars 1 packages 34 scripts 695 downloads 16 exports 39 dependencies

Last updated from:cb57a165eb. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK221
source / vignettesOK175
linux-release-x86_64OK223
macos-release-arm64OK194
macos-oldrel-arm64OK172
windows-develOK252
windows-releaseOK218
windows-oldrelOK228
wasm-releaseOK132

Exports:align_taxaclear_cached_resourcescreate_species_state_origin_matrixcreate_taxonomic_update_lookupdefault_versionget_apc_genus_family_lookupget_versionsload_taxonomic_resourcesnative_anywhere_in_australiastandardise_namesstandardise_taxon_rankstate_diversity_countsstrip_namesstrip_names_extrasynonyms_for_accepted_namesupdate_taxonomy

Dependencies:arrowaskpassassertthatbitbit64clicliprcpp11crayoncurldplyrgenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringdiststringistringrsystibbletidyselecttzdbutf8vctrsvroomwithr

APCalign

Rendered fromAPCalign.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2026-03-26
Started: 2023-08-01

Methods for updating taxon names in APCalign

Rendered fromupdating-taxon-names.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2026-03-26
Started: 2023-09-08