Package: APCalign 1.1.4
Daniel Falster
APCalign: Resolving Plant Taxon Names Using the Australian Plant Census
The process of resolving and updating taxon names is necessary when working with biodiversity data. 'APCalign' uses the Australian Plant Census (APC) and the Australian Plant Name Index (APNI) to align and update plant taxon names to current, accepted standards. 'APCalign' also supplies information about the establishment status (i.e. native or introduced) of plant taxa across different states/territories. https://doi.org/10.1071/BT24014
Authors:
APCalign_1.1.4.tar.gz
APCalign_1.1.4.zip(r-4.5)APCalign_1.1.4.zip(r-4.4)APCalign_1.1.4.zip(r-4.3)
APCalign_1.1.4.tgz(r-4.5-any)APCalign_1.1.4.tgz(r-4.4-any)APCalign_1.1.4.tgz(r-4.3-any)
APCalign_1.1.4.tar.gz(r-4.5-noble)APCalign_1.1.4.tar.gz(r-4.4-noble)
APCalign_1.1.4.tgz(r-4.4-emscripten)APCalign_1.1.4.tgz(r-4.3-emscripten)
APCalign.pdf |APCalign.html✨
APCalign/json (API)
NEWS
| # Install 'APCalign' in R: |
| install.packages('APCalign', repos = c('https://traitecoevo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/traitecoevo/apcalign/issues
Pkgdown site:https://traitecoevo.github.io
- gbif_lite - GBIF Australian Plant Data
Last updated 5 days agofrom:2455c8a01a. Checks:1 OK, 8 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 28 2025 |
| R-4.5-win | NOTE | Mar 28 2025 |
| R-4.5-mac | NOTE | Mar 28 2025 |
| R-4.5-linux | NOTE | Mar 28 2025 |
| R-4.4-win | NOTE | Mar 28 2025 |
| R-4.4-mac | NOTE | Mar 28 2025 |
| R-4.4-linux | NOTE | Mar 28 2025 |
| R-4.3-win | NOTE | Mar 28 2025 |
| R-4.3-mac | NOTE | Mar 28 2025 |
Exports:align_taxacreate_species_state_origin_matrixcreate_taxonomic_update_lookupdefault_versionget_apc_genus_family_lookupget_versionsload_taxonomic_resourcesnative_anywhere_in_australiastandardise_namesstandardise_taxon_rankstate_diversity_countsstrip_namesstrip_names_extraupdate_taxonomy
Dependencies:arrowaskpassassertthatbitbit64clicliprcpp11crayoncurldplyrfansigenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringdiststringistringrsystibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Align Australian plant scientific names to the APC or APNI | align_taxa |
| State level native and introduced origin status | create_species_state_origin_matrix |
| Create a table with the best-possible scientific name match for Australian plant names | create_taxonomic_update_lookup |
| Get the default version for stable data | default_version |
| GBIF Australian Plant Data | gbif_lite |
| Lookup Family by Genus from APC | get_apc_genus_family_lookup |
| Which versions of taxonomic resources are available? | get_versions |
| Load taxonomic reference lists, APC & APNI | load_taxonomic_resources |
| Native anywhere in Australia | native_anywhere_in_australia |
| Standardise taxon names | standardise_names |
| Standardise taxon ranks | standardise_taxon_rank |
| State- and territory-level diversity | state_diversity_counts |
| Strip taxon names | strip_names |
| Strip taxon names, extra | strip_names_extra |
| Update to currently accepted APC name and add APC/APNI name metadata | update_taxonomy |
