synonyms_for_accepted_names() to list synonyms for currently accepted taxon names.load_taxonomic_resources() now caches results in memory for the duration of the R session, so repeated calls with the same version return immediately without re-downloading or re-processing data.clear_cached_resources() to remove the session cache and force a reload.load_taxonomic_resources() now works offline when parquet files have been previously downloaded; default_version() falls back to the most recently cached local version when no internet connection is available.family column added to resource tables.create_species_state_origin_matrix() and state_diversity_counts() now includes the parameter include_infrataxa, allowing users to select whether just species-rank taxa or species and infra-specific taxa are output in the table. When create_species_state_origin_matrix() is called by native_anywhere_in_australia(), include_infrataxa = TRUE is set as the default, so infrataxa can also be checked by this function.Added get_versions()
Create a genus->family lookup from the specified APC release
Minor update to fix issues
First major release of APCalign. A preprint is available at https://www.biorxiv.org/content/10.1101/2024.02.02.578715v1. Article has been accepted for publication at Australian journal of Botany.
Following review, a number of changes have been implemented. These have sped & streamlined the package.
extract_genusstringr::word that is much faster.utils::adist to stringdist::stringdist(method = "dl")standardise_names to remove punctuation from the start of the stringstrip_names_extra (previously strip_names_2) to just perform
additional functions to strip_names, rather than repeating those performed by strip_names.create_taxonomic_update_lookupmatch_taxa.default_versionstandardise_taxon_rank