Package: litterfitter 0.1.3
Will Cornwell
litterfitter: Fit a Collection of Curves to Single Cohort Decomposition Data
There is a long tradition of studying the flux of carbon from the biosphere to the atmosphere by following a particular cohort of litter (wood, leaves, roots, or other organic material) through time. The resulting data are mass remaining and time. A variety of functional forms may be used to fit the resulting data. Some work better empirically. Some are better connected to a process-based understanding. Some have a small number of free parameters; others have more. This package matches decomposition data to a family of these curves using likelihood--based fitting. This package is based on published research by Cornwell & Weedon (2013) <doi:10.1111/2041-210X.12138>.
Authors:
litterfitter_0.1.3.tar.gz
litterfitter_0.1.3.zip(r-4.5)litterfitter_0.1.3.zip(r-4.4)litterfitter_0.1.3.zip(r-4.3)
litterfitter_0.1.3.tgz(r-4.4-any)litterfitter_0.1.3.tgz(r-4.3-any)
litterfitter_0.1.3.tar.gz(r-4.5-noble)litterfitter_0.1.3.tar.gz(r-4.4-noble)
litterfitter_0.1.3.tgz(r-4.4-emscripten)litterfitter_0.1.3.tgz(r-4.3-emscripten)
litterfitter.pdf |litterfitter.html✨
litterfitter/json (API)
NEWS
| # Install 'litterfitter' in R: |
| install.packages('litterfitter', repos = c('https://traitecoevo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/traitecoevo/litterfitter/issues
- pineneedles - Decomposition trajectory for pine needles
Last updated 1 years agofrom:3071108490. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 22 2024 |
| R-4.5-win | OK | Oct 22 2024 |
| R-4.5-linux | OK | Oct 22 2024 |
| R-4.4-win | OK | Oct 22 2024 |
| R-4.4-mac | OK | Oct 22 2024 |
| R-4.3-win | OK | Oct 22 2024 |
| R-4.3-mac | OK | Oct 22 2024 |
Exports:bootstrap_parametersfit_litterplot_multiple_fitssteady_statetime_to_prop_mass_remaining
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a bootstrap distribution of a particular coefficient from a model fit | bootstrap_parameters |
| Fit different models to single cohort decomposition data | fit_litter |
| litterfitter: methods for fitting curves to litter decomposition trajectories | litterfitter-package litterfitter |
| decomposition trajectory for pine needles | pineneedles |
| Plot multiple fits on one graph with model selection results displayed | plot_multiple_fits |
| Plot Decomposition Trajectory and Curve Fit | plot.litfit |
| Plot the bootstrap distribution for a parameter from a litfit object | plot.litfit_bootstrap |
| Predict method for litfit objects | predict.litfit |
| Estimate Steady State Biomass | steady_state |
| Get the predicted time until half mass loss for a litter decomposition trajectory | time_to_prop_mass_remaining |
