Package: austraits 3.1.1

Fonti Kar

austraits: Helpful functions to access the AusTraits database and wrangle data from other traits.build databases

`austraits` allow users to **access, explore and wrangle data** from traits.build relational databases. It is also an R interface to AusTraits, the Australian plant trait database. This package contains functions for joining data from various tables, filtering to specific records, combining multiple databases and visualising the distribution of the data. We expect this package will assist users in working with `traits.build` databases.

Authors:Daniel Falster [aut], Elizabeth Wenk [ctb], Fonti Kar [aut, cre], Dony Indiarto [aut]

austraits_3.1.1.tar.gz
austraits_3.1.1.zip(r-4.7)austraits_3.1.1.zip(r-4.6)austraits_3.1.1.zip(r-4.5)
austraits_3.1.1.tgz(r-4.6-any)austraits_3.1.1.tgz(r-4.5-any)
austraits_3.1.1.tar.gz(r-4.7-any)austraits_3.1.1.tar.gz(r-4.6-any)
austraits_3.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
austraits/json (API)

# Install 'austraits' in R:

install.packages('austraits', repos = c('https://traitecoevo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/traitecoevo/austraits/issues

Pkgdown/docs site:https://traitecoevo.github.io

On CRAN:

australia database plants traits

6.20 score 23 stars 1 packages 57 scripts 33 exports 38 dependencies

Last updated from:36b3fa3df3. Checks:2 ERROR, 2 OK, 5 WARNING. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	ERROR	286
source / vignettes	OK	211
linux-release-x86_64	ERROR	320
macos-release-arm64	WARNING	270
macos-oldrel-arm64	WARNING	307
windows-devel	WARNING	268
windows-release	WARNING	279
windows-oldrel	WARNING	282
wasm-release	OK	131

Exports:%>%as_wide_table bind_databases bind_trait_values convert_df_to_list convert_list_to_df1 convert_list_to_df2 extract_data extract_dataset extract_taxa extract_trait flatten_database get_version_latest get_versions join_context_properties join_contributors join_identifiers join_location_coordinates join_location_properties join_methods join_taxa join_taxonomic_updates load_austraits lookup_context_property lookup_location_property lookup_trait plot_locations plot_site_locations plot_trait_distribution_beeswarm separate_trait_values summarise_database trait_pivot_longer trait_pivot_wider

Dependencies:askpass backports bibtex cli cpp11 curl dplyr generics glue hms httr janitor jsonlite lifecycle lubridate magrittr mime openssl pillar pkgconfig plyr purrr R6 Rcpp RefManageR rlang snakecase stringi stringr sys tibble tidyr tidyselect timechange utf8 vctrs withr xml2

austraits

Rendered fromaustraits.Rmdusingknitr::rmarkdown

Last update: 2025-05-07
Started: 2021-06-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create a single wide table from a traits.build data object	as_wide_table
Bind multiple traits.build data objects into a single data object	bind_databases
Bind trait values	bind_trait_values
Convert dataframe to list	convert_df_to_list
Convert list with single entries to dataframe	convert_list_to_df1
Convert list of lists to dataframe	convert_list_to_df2
Extract data from traits.build database	extract_data
Extract all data for a particular dataset	extract_dataset
Extract all data for specific taxa	extract_taxa
Extract all data for specific traits	extract_trait
Create combined traits.build table	flatten_database
Retrieve compiled by information from metadata table	get_compiled_by_traits.build
Retrieve traits table if user passes traits.build object.	get_traits_table
Retrieve the latest version of AusTraits	get_version_latest
Print out AusTraits versions	get_versions
Joining context properties to traits table	join_context_properties
Joining data contributor metadata to traits table	join_contributors
Joining identifiers to traits table	join_identifiers
Joining location coordinates to traits table	join_location_coordinates
Joining location properties to traits table	join_location_properties
Joining methodological information to traits table	join_methods
Joining taxonomy to traits table	join_taxa
Joining taxonomic updates information to traits table	join_taxonomic_updates
Load AusTraits database into R console	load_austraits
Look up context properties	lookup_context_property
Look up location properties	lookup_location_property
Look up a particular trait term	lookup_trait
Produce location maps of trait values	plot_locations
Produce location maps of trait values	plot_site_locations
Beeswarm Trait distribution	plot_trait_distribution_beeswarm
Generic for outputting a nice summary for austraits objects	print.traits.build
Separate bounded trait values	separate_trait_values
Summarise counts for a particular variable of interest	summarise_database
Pivot wide format traits table into long format	trait_pivot_longer
Pivot long format traits table into wide format	trait_pivot_wider