Package: austraits 3.0.1

Fonti Kar

austraits: Helpful functions to access the AusTraits database and wrangle data from other traits.build databases

`austraits` allow users to **access, explore and wrangle data** from traits.build relational databases. It is also an R interface to AusTraits, the Australian plant trait database. This package contains functions for joining data from various tables, filtering to specific records, combining multiple databases and visualising the distribution of the data. We expect this package will assist users in working with `traits.build` databases.

Authors:Daniel Falster [aut], Elizabeth Wenk [ctb], Fonti Kar [aut, cre], Dony Indiarto [aut]

austraits_3.0.1.tar.gz
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austraits_3.0.1.tgz(r-4.4-any)austraits_3.0.1.tgz(r-4.3-any)
austraits_3.0.1.tar.gz(r-4.5-noble)austraits_3.0.1.tar.gz(r-4.4-noble)
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austraits.pdf |austraits.html✨
austraits/json (API)
NEWS

# Install 'austraits' in R:
install.packages('austraits', repos = c('https://traitecoevo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/traitecoevo/austraits/issues

Pkgdown site:https://traitecoevo.github.io

On CRAN:

australiadatabaseplantstraits

5.68 score 20 stars 1 packages 40 scripts 32 exports 39 dependencies

Last updated 18 days agofrom:9935b90f9c. Checks:OK: 1 ERROR: 1 NOTE: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 08 2024
R-4.5-winNOTEDec 08 2024
R-4.5-linuxERRORDec 08 2024
R-4.4-winNOTEDec 08 2024
R-4.4-macNOTEDec 08 2024
R-4.3-winNOTEDec 08 2024
R-4.3-macNOTEDec 08 2024

Exports:%>%as_wide_tablebind_databasesbind_trait_valuesconvert_df_to_listconvert_list_to_df1convert_list_to_df2extract_dataextract_datasetextract_taxaextract_traitflatten_databaseget_version_latestget_versionsjoin_context_propertiesjoin_contributorsjoin_location_coordinatesjoin_location_propertiesjoin_methodsjoin_taxajoin_taxonomic_updatesload_austraitslookup_context_propertylookup_location_propertylookup_traitplot_locationsplot_site_locationsplot_trait_distribution_beeswarmseparate_trait_valuessummarise_databasetrait_pivot_longertrait_pivot_wider

Dependencies:askpassbackportsbibtexclicpp11curldplyrfansigenericsgluehmshttrjanitorjsonlitelifecyclelubridatemagrittrmimeopensslpillarpkgconfigplyrpurrrR6RcppRefManageRrlangsnakecasestringistringrsystibbletidyrtidyselecttimechangeutf8vctrswithrxml2

austraits

Fonti Kar, Elizabeth Wenk, Daniel Falster

Rendered fromaustraits.Rmdusingknitr::rmarkdownon Dec 08 2024.

Last update: 2024-11-19
Started: 2021-06-02

Readme and manuals

Help Manual

Help pageTopics
Create a single wide table from a traits.build data objectas_wide_table
Bind multiple traits.build data objects into a single data objectbind_databases
Bind trait valuesbind_trait_values
Convert dataframe to listconvert_df_to_list
Convert list with single entries to dataframeconvert_list_to_df1
Convert list of lists to dataframeconvert_list_to_df2
Extract data from traits.build databaseextract_data
Extract all data for a particular datasetextract_dataset
Extract all data for specific taxaextract_taxa
Extract all data for specific traitsextract_trait
Create combined traits.build tableflatten_database
Retrieve compiled by information from metadata tableget_compiled_by_traits.build
Retrieve traits table if user passes traits.build object.get_traits_table
Retrieve the latest version of AusTraitsget_version_latest
Print out AusTraits versionsget_versions
Joining context properties to traits tablejoin_context_properties
Joining data contributor metadata to traits tablejoin_contributors
Joining location coordinates to traits tablejoin_location_coordinates
Joining location properties to traits tablejoin_location_properties
Joining methodological information to traits tablejoin_methods
Joining taxonomy to traits tablejoin_taxa
Joining taxonomic updates information to traits tablejoin_taxonomic_updates
Load AusTraits database into R consoleload_austraits
Look up context propertieslookup_context_property
Look up location propertieslookup_location_property
Look up a particular trait termlookup_trait
Produce location maps of trait valuesplot_locations
Produce location maps of trait valuesplot_site_locations
Beeswarm Trait distributionplot_trait_distribution_beeswarm
Generic for outputting a nice summary for austraits objectsprint.traits.build
Separate bounded trait valuesseparate_trait_values
Summarise counts for a particular variable of interestsummarise_database
Pivot wide format traits table into long formattrait_pivot_longer
Pivot long format traits table into wide formattrait_pivot_wider