‘bmsma’ is under active development, you can install the development version of ‘bmsma’ from GitHub with:
bmsma_model("ols") |>
bmsma_assign_data(X = Loblolly$age,
Y = Loblolly$height,
N = nrow(Loblolly)) |>
bmsma_run()
#>
#> SAMPLING FOR MODEL 'ols' NOW (CHAIN 1).
#> Chain 1:
#> Chain 1: Gradient evaluation took 1.7e-05 seconds
#> Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
#> Chain 1: Adjust your expectations accordingly!
#> Chain 1:
#> Chain 1:
#> Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
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#> Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
#> Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
#> Chain 1:
#> Chain 1: Elapsed Time: 0.025 seconds (Warm-up)
#> Chain 1: 0.021 seconds (Sampling)
#> Chain 1: 0.046 seconds (Total)
#> Chain 1:
#>
#> SAMPLING FOR MODEL 'ols' NOW (CHAIN 2).
#> Chain 2:
#> Chain 2: Gradient evaluation took 3e-06 seconds
#> Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.03 seconds.
#> Chain 2: Adjust your expectations accordingly!
#> Chain 2:
#> Chain 2:
#> Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
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#> Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
#> Chain 2:
#> Chain 2: Elapsed Time: 0.024 seconds (Warm-up)
#> Chain 2: 0.021 seconds (Sampling)
#> Chain 2: 0.045 seconds (Total)
#> Chain 2:
#>
#> SAMPLING FOR MODEL 'ols' NOW (CHAIN 3).
#> Chain 3:
#> Chain 3: Gradient evaluation took 3e-06 seconds
#> Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.03 seconds.
#> Chain 3: Adjust your expectations accordingly!
#> Chain 3:
#> Chain 3:
#> Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
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#> Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
#> Chain 3:
#> Chain 3: Elapsed Time: 0.025 seconds (Warm-up)
#> Chain 3: 0.025 seconds (Sampling)
#> Chain 3: 0.05 seconds (Total)
#> Chain 3:
#>
#> SAMPLING FOR MODEL 'ols' NOW (CHAIN 4).
#> Chain 4:
#> Chain 4: Gradient evaluation took 3e-06 seconds
#> Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.03 seconds.
#> Chain 4: Adjust your expectations accordingly!
#> Chain 4:
#> Chain 4:
#> Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
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#> Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
#> Chain 4:
#> Chain 4: Elapsed Time: 0.026 seconds (Warm-up)
#> Chain 4: 0.022 seconds (Sampling)
#> Chain 4: 0.048 seconds (Total)
#> Chain 4:
#> Inference for Stan model: ols.
#> 4 chains, each with iter=2000; warmup=1000; thin=1;
#> post-warmup draws per chain=1000, total post-warmup draws=4000.
#>
#> mean se_mean sd 2.5% 25% 50% 75% 97.5% n_eff
#> intercept -1.34 0.02 0.65 -2.64 -1.77 -1.34 -0.92 -0.08 1632
#> beta 2.59 0.00 0.04 2.51 2.56 2.59 2.62 2.68 1549
#> sigma 3.00 0.01 0.25 2.56 2.83 2.98 3.15 3.54 1846
#> lp__ -132.30 0.04 1.33 -135.80 -132.91 -131.96 -131.34 -130.80 1319
#> Rhat
#> intercept 1
#> beta 1
#> sigma 1
#> lp__ 1
#>
#> Samples were drawn using NUTS(diag_e) at Thu Mar 13 07:24:11 2025.
#> For each parameter, n_eff is a crude measure of effective sample size,
#> and Rhat is the potential scale reduction factor on split chains (at
#> convergence, Rhat=1).