{
  "_id": "6af86d66f58eaab79920fb12",
  "Package": "taxonAlign",
  "Title": "Align and Update Taxonomic Names Against Any Taxonomic Reference",
  "Version": "0.0.0.9001",
  "Authors@R": "c(\nperson(given = \"Elizabeth\", family = \"Wenk\", role = c(\"aut\", \"ctb\", \"cph\"), email = \"e.wenk@unsw.edu.au\", comment = c(ORCID = \"0000-0001-5640-5910\")),\nperson(given = \"Fonti\", family = \"Kar\", role = c(\"aut\", \"cre\"), email = \"f.kar@unsw.edu.au\", comment = c(ORCID = \"0000-0002-2760-3974\"))\n)",
  "Description": "Matches lists of raw taxon names, including misspelt,\ninformal and morphospecies names, to a taxonomic reference, and\nupdates them to their currently accepted names. The reference\ncan be one or more released datasets (versioned, so results are\nreproducible) or the user's own tables, in a documented format,\nat any combination of taxonomic ranks. The companion package\ntaxonAlign.dataprep builds and releases those datasets, and\nhelps users turn their own references into the format.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Remotes": [
    "traitecoevo/APCalign"
  ],
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "cmake libicu-dev libxml2-dev libssl-dev libx11-dev",
  "Repository": "https://traitecoevo.r-universe.dev",
  "Date/Publication": "2026-11-14 12:29:23 UTC",
  "RemoteUrl": "https://github.com/traitecoevo/taxonAlign",
  "RemoteRef": "HEAD",
  "RemoteSha": "677a656b6f1c3d8882ef964baa14efd5c781e871",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-14 14:09:24 UTC",
    "User": "root"
  },
  "Author": "Elizabeth Wenk [aut, ctb, cph] (ORCID:\n<https://orcid.org/0000-0001-5640-5910>),\nFonti Kar [aut, cre] (ORCID: <https://orcid.org/0000-0002-2760-3974>)",
  "Maintainer": "Fonti Kar <f.kar@unsw.edu.au>",
  "_user": "traitecoevo",
  "_type": "src",
  "_file": "taxonAlign_0.0.0.9001.tar.gz",
  "_fileid": "https://r2.ropensci.org/97f87ab01e0fa7776a74e15c5a84a97e50c53048db1e0c3f6a0ecf636fbef3b5",
  "_filesize": 5076904,
  "_sha256": "97f87ab01e0fa7776a74e15c5a84a97e50c53048db1e0c3f6a0ecf636fbef3b5",
  "_expires": "2027-02-22T14:17:08.000Z",
  "_created": "2026-11-14T14:09:24.000Z",
  "_published": "2026-11-14T14:17:10.354Z",
  "_upstream": "https://github.com/traitecoevo/taxonAlign",
  "_status": "failure",
  "_maintainer": {
    "name": "Fonti Kar",
    "email": "f.kar@unsw.edu.au",
    "login": "fontikar",
    "mastodon": "@fontikar@fosstodon.org",
    "twitter": "@fonti_kar",
    "description": "I like solving R code mysteries and coding for biodiversity",
    "uuid": 12161802,
    "orcid": "0000-0002-2760-3974"
  },
  "_jobs": [
    {
      "job": 132472794495,
      "time": 172,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "14117436255"
    },
    {
      "job": 132472794505,
      "time": 147,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "14116814417"
    },
    {
      "job": 132472794446,
      "time": 110,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "14117143425"
    },
    {
      "job": 132472794562,
      "time": 117,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "14116754488"
    },
    {
      "job": 132471921178,
      "time": 195,
      "config": "source",
      "r": "4.6.2",
      "check": "ERROR",
      "artifact": "14117395988"
    },
    {
      "job": 132472794460,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "14117023650"
    },
    {
      "job": 132472794480,
      "time": 422,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "14117198868"
    },
    {
      "job": 132472794496,
      "time": 183,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "14117451118"
    },
    {
      "job": 132472794557,
      "time": 194,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "14116904316"
    }
  ],
  "_buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213",
  "_commit": {
    "id": "677a656b6f1c3d8882ef964baa14efd5c781e871",
    "author": "Elizabeth Wenk <ehwenk@gmail.com>",
    "committer": "Elizabeth Wenk <ehwenk@gmail.com>",
    "message": "Fix comment grammar in helper-apc.R\n\nCo-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>\n",
    "time": 1794659363
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "APCalign",
      "role": "Imports"
    },
    {
      "package": "arrow",
      "role": "Imports"
    },
    {
      "package": "curl",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "stringdist",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.1.9",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "traitecoevo",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-16",
      "n": 5
    },
    {
      "week": "2026-20",
      "n": 2
    },
    {
      "week": "2026-34",
      "n": 26
    },
    {
      "week": "2026-35",
      "n": 14
    },
    {
      "week": "2026-41",
      "n": 4
    },
    {
      "week": "2026-43",
      "n": 5
    },
    {
      "week": "2026-46",
      "n": 9
    }
  ],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "ehwenk",
      "count": 58,
      "uuid": 8701562
    },
    {
      "user": "fontikar",
      "count": 7,
      "uuid": 12161802
    }
  ],
  "_userbio": {
    "uuid": 11747619,
    "type": "organization",
    "name": "Trait Ecology and Evolution",
    "followers": 41
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/taxonAlign"
  },
  "_devurl": "https://github.com/traitecoevo/taxonalign",
  "_searchresults": 0,
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "extra/taxonAlign.html",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "align_taxa",
    "check_taxonomic_reference",
    "create_taxonomic_update_lookup",
    "data_release_datasets",
    "data_release_versions",
    "download_data_release_files",
    "load_taxonomic_resources",
    "prepare_taxonomic_resources",
    "taxonomic_reference_schema",
    "update_taxa"
  ],
  "_help": [
    {
      "page": "align_taxa",
      "title": "Align raw taxon names to a prepared taxonomic reference",
      "topics": [
        "align_taxa"
      ]
    },
    {
      "page": "check_taxonomic_reference",
      "title": "Check a table is in taxonAlign's taxonomic reference format",
      "topics": [
        "check_taxonomic_reference"
      ]
    },
    {
      "page": "create_taxonomic_update_lookup",
      "title": "Align and update a list of taxon names in one call",
      "topics": [
        "create_taxonomic_update_lookup"
      ]
    },
    {
      "page": "data_release_datasets",
      "title": "List the datasets in a taxonAlign data release",
      "topics": [
        "data_release_datasets"
      ]
    },
    {
      "page": "data_release_versions",
      "title": "List the available taxonAlign data releases",
      "topics": [
        "data_release_versions"
      ]
    },
    {
      "page": "download_data_release_files",
      "title": "Download files from a taxonAlign data release",
      "topics": [
        "download_data_release_files"
      ]
    },
    {
      "page": "load_taxonomic_resources",
      "title": "Load released taxonomic reference data",
      "topics": [
        "load_taxonomic_resources"
      ]
    },
    {
      "page": "prepare_taxonomic_resources",
      "title": "Prepare a combined taxonomic reference table for name matching",
      "topics": [
        "prepare_taxonomic_resources"
      ]
    },
    {
      "page": "taxonomic_reference_schema",
      "title": "The taxonomic reference format taxonAlign matches against",
      "topics": [
        "taxonomic_reference_schema"
      ]
    },
    {
      "page": "update_taxa",
      "title": "Resolve aligned names forward to their current accepted name",
      "topics": [
        "update_taxa"
      ]
    }
  ],
  "_readme": "https://github.com/traitecoevo/taxonAlign/raw/HEAD/README.md",
  "_rundeps": [
    "APCalign",
    "arrow",
    "askpass",
    "assertthat",
    "bit",
    "bit64",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "curl",
    "dplyr",
    "generics",
    "glue",
    "hms",
    "httr",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "mime",
    "nanoparquet",
    "openssl",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "readr",
    "rlang",
    "stringdist",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "vroom",
    "withr"
  ],
  "_score": 2.845098040014257,
  "_indexed": true,
  "_nocasepkg": "taxonalign",
  "_universes": [
    "traitecoevo",
    "fontikar"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:12:03.000Z",
      "distro": "resolute",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/9c63e89ade8396f4ced796616fd0f30d77c6949d05d81125ff9872807b691b0b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:11:42.000Z",
      "distro": "resolute",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/25673c603eb578a2f66922e842a6525576a271d34dfd4bfe0ac6dc94468a208d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:11:09.000Z",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/c671ce878ffb30008c844c811c6f1c3689cdc550a68dad1125a83c43e8135072",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:11:22.000Z",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/12c5c3ad195f4fc4218fef1a58a902d3299e9f31678b4d117ee25b1ad5a23ceb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:11:34.000Z",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/a75a7ad7b37e7d161e61acc467daffc80c53eac30e58c280d14ce71b56e96503",
      "status": "success",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:15:42.000Z",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/bbe0b87237ba95f18e7389cc0fb30e88a36678f524e4e59a8bdbed948e35ef21",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:11:33.000Z",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/13da996388020ea65db7d454455a4e7b3ddea77682d2a4725c0065555913b59a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "0.0.0.9001",
      "date": "2026-11-14T14:11:50.000Z",
      "commit": "677a656b6f1c3d8882ef964baa14efd5c781e871",
      "fileid": "https://r2.ropensci.org/ebcab641fefcbdf9a9c8c7727181029a27df917bc823e98dd42b2190c5dc0d18",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/traitecoevo/actions/runs/43603091213"
    }
  ]
}