{ "_id": "6a519dd49b92047c28d50b7f", "Package": "plant", "Title": "A Package for Modelling Forest Trait Ecology and Evolution", "Version": "2.0.0.9002", "Authors@R": "c(\nperson(\"Daniel\", \"Falster\", , \"daniel.falster@unsw.edu.au\", c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9814-092X\")),\nperson(\"Richard\", \"FitzJohn\", , \"\", \"aut\"),\nperson(\"Andrew\", \"O'Reilly-Nugent\", , \"\", \"aut\"),\nperson(\"Isaac\", \"Towers\", , \"\", \"aut\"),\nperson(\"Mitchell\", \"Henry\", , \"\", \"ctb\"),\nperson(\"Rafael\", \"Schouten\", , \"\", \"ctb\"),\nperson(\"John\", \"Wilshire\", , \"\", \"ctb\")\n)", "Maintainer": "Daniel Falster ", "Description": "Solves trait, size and patch structured model from\n(Falster et al. 2016) using either method of characteristics or\nas stochastic, finite-sized population.", "Encoding": "UTF-8", "License": "AGPL (>= 3)", "Remotes": [ "richfitz/RcppR6", "traitecoevo/odelia" ], "URL": "https://github.com/traitecoevo/plant", "BugReports": 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"environment_type" ] }, { "page": "export_patch_state", "title": "Export patch state from an SCM", "topics": [ "export_patch_state" ] }, { "page": "FF16_Environment", "title": "Create an FF16_Environment object.", "topics": [ "FF16_Environment", "K93_Environment" ] }, { "page": "expand_state", "title": "Add additional state variables to the species component in output of a model.", "topics": [ "expand_state", "FF16_expand_state", "K93_expand_state", "TF24f_expand_state", "TF24_expand_state" ] }, { "page": "FF16_generate_stand_report", "title": "Generates a report on stand grown with FF16 strategy", "topics": [ "FF16_generate_stand_report" ] }, { "page": "FF16_hyperpar", "title": "Hyperparameter function for FF16 physiological model", "topics": [ "FF16_hyperpar" ] }, { "page": "FF16_individual", "title": "Create a FF16 Individual", "topics": [ "FF16_Individual" ] }, { "page": "FF16_Parameters", "title": "Setup an a model system with default or specified parameters", "topics": [ "FF16_Parameters", "K93_Parameters" ] }, { "page": "FF16_Pars", "title": "FF16 strategy parameters", "topics": [ "FF16_Pars" ] }, { "page": "FF16_Strategy", "title": "Strategy parameters", "topics": [ "FF16_Strategy" ] }, { "page": "generate_strategy", "title": "Generate strategies from traits", "topics": [ "generate_strategy", "strategy_list" ] }, { "page": "grow_individual_to_size", "title": "Grow individual to given size", "topics": [ "grow_individual_to_height", "grow_individual_to_size" ] }, { "page": "grow_individual_to_time", "title": "Grow a plant", "topics": [ "grow_individual_to_time" ] }, { "page": "Individual", "title": "Individual object", "topics": [ "Individual" ] }, { "page": "integrate_over_size_distribution", "title": "Integrate over the size distribution for each species at each time point, to give totals of each variable Integrations are performed using trapezium integration", "topics": [ "integrate_over_size_distribution" ] }, { "page": "Internals", "title": "Extract Internals from plant object", "topics": [ "Internals" ] }, { "page": "interpolate_to_heights", "title": "Interpolate data on size distributions for each species to specific heights at every time point", "topics": [ "interpolate_to_heights" ] }, { "page": "interpolate_to_times", "title": "Interpolate data on size distributions for each species to specific timer points, using specified interpolation method", "topics": [ "interpolate_to_times" ] }, { "page": "Interpolator", "title": "Spline interpolation", "topics": [ "Interpolator" ] }, { "page": "K93_hyperpar", "title": "Hyperparameter function for K93 physiological model", "topics": [ "K93_hyperpar" ] }, { "page": "K93_Individual", "title": "Create a K93 Individual or Node", "topics": [ "K93_Individual" ] }, { "page": "K93_Pars", "title": "K93 strategy parameters", "topics": [ "K93_Pars" ] }, { "page": "K93_Strategy", "title": "Strategy parameters", "topics": [ "K93_Strategy" ] }, { "page": "Leaf", "title": "Leaf model", "topics": [ "Leaf" ] }, { "page": "make_FF16_hyperpar", "title": "Hyperparameters for FF16 physiological model", "topics": [ "make_FF16_hyperpar" ] }, { "page": "Hyperparameter_functions", "title": "Hyperparameters for physiological model", "topics": [ "hyperpar", "make_hyperpar", "param_hyperpar" ] }, { "page": "make_initial_state", "title": "Build an initial size distribution", "topics": [ "make_initial_state" ] }, { "page": "make_K93_hyperpar", "title": "Hyperparameters for K93 physiological model", "topics": [ "make_K93_hyperpar" ] }, { "page": "make_TF24_hyperpar", "title": "Hyperparameters for TF24 physiological model", "topics": [ "make_TF24f_hyperpar", "make_TF24_hyperpar" ] }, { "page": "model_version", "title": "Scientific version of a physiological model", "topics": [ "model_id", "model_version" ] }, { "page": "No_Disturbance", "title": "No disturbance regime No_Disturbance_Regime control object", "topics": [ "No_Disturbance" ] }, { "page": "node_schedule_times_default", 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"resource_compensation_point", "title": "Whole plant light compensation point", "topics": [ "resource_compensation_point" ] }, { "page": "run_plant_benchmarks", "title": "Check performance on current system using package bench", "topics": [ "run_plant_benchmarks" ] }, { "page": "run_scm", "title": "Run SCM", "topics": [ "run_scm" ] }, { "page": "run_stochastic_collect", "title": "Run a stochastic patch, Collecting Output", "topics": [ "run_stochastic_collect" ] }, { "page": "scenario_eval", "title": "Scenario evaluation framework for the TF24 / TF24f hydraulic models.", "concept": [ "scenario_eval" ], "topics": [ "build_scenario", "classify_scm_run", "evaluate_scenario", "read_scenario_mapping", "read_scenario_table", "run_scenarios", "scenario_eval", "scenario_generate_report", "scenario_model_fingerprint", "scenario_run_metadata", "scenario_summary", "scenario_to_config" ] }, { "page": "scm_base_parameters", "title": "Basic default parameters for a given strategy", "topics": [ "scm_base_parameters" ] }, { "page": "seq_log", "title": "Sequence in log space", "topics": [ "seq_log", "seq_log_range", "seq_range" ] }, { "page": "set_initial_state", "title": "Seed Parameters with an initial patch state", "topics": [ "set_initial_state" ] }, { "page": "TF24_Environment", "title": "Create an TF24_Environment object.", "topics": [ "TF24_Environment" ] }, { "page": "TF24_generate_stand_report", "title": "Generates a report on stand grown with TF24 strategy", "topics": [ "TF24_generate_stand_report" ] }, { "page": "TF24_hyperpar", "title": "Hyperparameter function for TF24 physiological model", "topics": [ "TF24_hyperpar" ] }, { "page": "TF24_Individual", "title": "Create a TF24 Plant or Node", "topics": [ "TF24_Individual" ] }, { "page": "TF24_Parameters", "title": "Setup an a TF24 system with default or specified parameters", "topics": [ "TF24_Parameters" ] }, { "page": "TF24_Pars", "title": "TF24 strategy parameters", "topics": [ "TF24_Pars" ] }, { "page": 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